{"id":71,"date":"2020-11-17T13:02:42","date_gmt":"2020-11-17T12:02:42","guid":{"rendered":"https:\/\/mxrdr-info.ocean.icm.edu.pl\/?page_id=71"},"modified":"2021-10-29T15:02:25","modified_gmt":"2021-10-29T13:02:25","slug":"metadata","status":"publish","type":"page","link":"https:\/\/info.mxrdr.icm.edu.pl\/index.php\/metadata\/","title":{"rendered":"Metadata"},"content":{"rendered":"\n

This section contains table with json names for metadata fields. Required metadata are marked by asterisks. Please note that some of the metadata filed accept only specific values, those are: macromolecular type, processing software and space group, accepted values can be found here<\/a>.<\/p>\n\n\n\n

name of metadata field<\/th>json name \/ keywords for Advanced Search<\/th><\/tr><\/thead>
Citation Metadata<\/em><\/strong>:<\/td><\/td><\/tr>
Title *<\/td>title<\/td><\/tr>
Author:
<\/em>Name *
Affiliation
Identifier Scheme
Identifier<\/td>
authorName
authorAffiliation
authorIdentifierScheme
authorIdentifier<\/td><\/tr>
Contact:
<\/em>Name
Affiliation
E-mail *<\/td>
datasetContactName
datasetContactAffiliation
datasetContactEmail<\/td><\/tr>
Description:
<\/em>Text *<\/td>
dsDescription<\/td><\/tr>
Subject *<\/td>subject<\/td><\/tr>
Keyword:
<\/em>Term<\/td>
keywordValue<\/td><\/tr>
Grant Information:
<\/em>Grant Agency
Grant Agency Short Name
Grant Program
Grant Number<\/td>
grantNumberAgency
grantNumberAgencyShortName
grantNumberProgram
grantNumberValue<\/td><\/tr>
Depositor<\/td>depositor<\/td><\/tr>
Deposit Date<\/td>depositDate<\/td><\/tr>
Macromolecular Crystallography Metadata<\/em><\/strong>:<\/td><\/td><\/tr>
Sample Name<\/td>sampleName<\/td><\/tr>
PDB ID<\/td>pdbId<\/td><\/tr>
Beamline Institution *<\/td>beamlineInstitution<\/td><\/tr>
Beamline *<\/td>beamline<\/td><\/tr>
Detector Type *<\/td>detectorType<\/td><\/tr>
Data Collection:<\/em>
Wavelength [\u00c5] *
Crystal-Detector Distance [mm] *
Oscillation-Step Size [\u00b0] *
Number of Frames *
Position of the Beam in the X Axis [px] *
Position of the Beam in the Y Axis [px] *
Temperature [K]
Starting Angle [\u00b0]
Detector Thickness [mm]
Detector Overload<\/td>
dataCollectionWavelength
dataCollectionDetectorDistance
dataCollectionOscillationStepSize
dataCollectionNumberOfFrames
dataCollectionOrgX
dataCollectionOrgY
dataCollectionTemperature
dataCollectionStartingAngle
dataCollectionDetectorThickness
dataCollectionDetectorOverload<\/td><\/tr>
Unit Cell Parameters:
<\/em>a [\u00c5]
b [\u00c5]
c [\u00c5]
\u03b1 [\u00b0]
\u03b2 [\u00b0]
\u03b3 [\u00b0]<\/td>
unitCellParameterA
unitCellParameterB
unitCellParameterC
unitCellParameterAlpha
unitCellParameterBeta
unitCellParameterGamma<\/td><\/tr>
Overall:
<\/em>Completeness
Mean I\/Sigma(I)
CC_1\/2
R_merge
R_meas
Resolution Low
Resolution High
Number of Observed Reflections
Number of Unique Reflections
Number of Possible Reflections
Anomalous Correlation
Anomalous Signal<\/td>
overallCompleteness
overallISigma
overallCc
overallRMerge
overallRMeas
overallDataResolutionRangeLow
overallDataResolutionRangeHigh
overallNumberOfObservedReflections
overallNumberOfUniqueReflections
overallNumberOfPossibleReflections
overallAnomalousCorrelation
overallAnomalousSignal<\/td><\/tr>
Highest Resolution Shell:
<\/em>Completeness
Mean I\/Sigma(I)
CC_1\/2
R_merge
R_meas
Resolution Low
Resolution High
Number of Observed Reflections
Number of Unique Reflections
Number of Possible Reflections
Anomalous Correlation
Anomalous Signal<\/td>		hrsCompleteness
hrsISigma
hrsCc
hrsRMerge
hrsRMeas
hrsDataResolutionRangeLow
hrsDataResolutionRangeHigh
hrsNumberOfObservedReflections
hrsNumberOfUniqueReflections
hrsNumberOfPossibleReflections
hrsAnomalousCorrelation
hrsAnomalousSignal<\/td><\/tr>
Monochromator Type<\/td>monochromator<\/td><\/tr>
Processing Software<\/td>processingSoftware<\/td><\/tr>
Refinement Factors:
<\/em>R-work
R-free<\/td>
refinementFactorRWork
refinementFactorRFree<\/td><\/tr>
Macromolecule Type*<\/td>macromoleculeType<\/td><\/tr>
Molecular Weight<\/td>molecularWeight<\/td><\/tr>
Entity:
<\/em>ID
Sequence<\/td>
entityId
entitySequence<\/td><\/tr>
Entity Count
Residue Count
Atom Site Count<\/td>		entityCount
residueCount
atomSiteCount<\/td><\/tr>
PDB Deposit:
<\/em>PDB Structure Title
PDB DOI
PDB Structure Author
PDB Deposit Date
PDB Release Date
PDB Revision Date<\/td>
pdbTitle
pdbDoi
pdbStructureAuthor
pdbDepositDate
pdbReleaseDate
pdbRevisionDate<\/td><\/tr>
PDB Primary Citation:
<\/em>PDB Primary Citation Title
PDB Primary Citation PubMed ID
PDB Primary Citation Author
PDB Primary Citation Journal Name
PDB Primary Citation Publication Year<\/td>
citationTitle
citationPubmedId
citationAuthor
citationJournal
citationYear<\/td><\/tr><\/tbody>
name of metadata field<\/strong><\/td>json name \/ keywords for Advanced Search<\/strong><\/strong><\/td><\/tr><\/tfoot><\/table>
Metadata table<\/figcaption><\/figure>\n\n\n\n


<\/p>\n","protected":false},"excerpt":{"rendered":"

This section contains table with json names for metadata fields. Required metadata are marked by asterisks. Please note that some of the metadata filed accept only specific values, those are: macromolecular type, processing software and space group, accepted values can be found here. name of metadata field json name \/ keywords for Advanced Search Citation … <\/p>\n

Continue reading “Metadata”<\/span><\/a><\/p>\n","protected":false},"author":4,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"_links":{"self":[{"href":"https:\/\/info.mxrdr.icm.edu.pl\/index.php\/wp-json\/wp\/v2\/pages\/71"}],"collection":[{"href":"https:\/\/info.mxrdr.icm.edu.pl\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/info.mxrdr.icm.edu.pl\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/info.mxrdr.icm.edu.pl\/index.php\/wp-json\/wp\/v2\/users\/4"}],"replies":[{"embeddable":true,"href":"https:\/\/info.mxrdr.icm.edu.pl\/index.php\/wp-json\/wp\/v2\/comments?post=71"}],"version-history":[{"count":28,"href":"https:\/\/info.mxrdr.icm.edu.pl\/index.php\/wp-json\/wp\/v2\/pages\/71\/revisions"}],"predecessor-version":[{"id":602,"href":"https:\/\/info.mxrdr.icm.edu.pl\/index.php\/wp-json\/wp\/v2\/pages\/71\/revisions\/602"}],"wp:attachment":[{"href":"https:\/\/info.mxrdr.icm.edu.pl\/index.php\/wp-json\/wp\/v2\/media?parent=71"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}